PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0052ss00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 508aa    MW: 57627.1 Da    PI: 7.196
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0052ss00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.65.9e-1539129199
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffk  t+ d+l++  l++p  f   +  +++   +k++ l+d++g++W+vk+  +   g++v+++GW++F + +gLk+g  +v+ ++++  f
  Vang0052ss00120.1  39 FFKFITRQDYLTT--LCIPPAFS-GIvaSMV---NKKINLNDSTGQQWKVKV--SEVNGSFVFGEGWSRFSSGHGLKVGYLLVLNYIKDLHF 122
                        7888888888887..89****97.5544333...468***************..999999**************************987666 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                           vk++++
  Vang0052ss00120.1 123 --DVKIYDT 129
                        ..8888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1933132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1934132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.88537130IPR003340B3 DNA binding domain
CDDcd100174.61E-1338128No hitNo description
PfamPF023623.1E-1239128IPR003340B3 DNA binding domain
SMARTSM010192.3E-739130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-9435504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-9437487IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-6441486No hitNo description
PROSITE profilePS508638.924441507IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
LIEKRGKMGG EEQGVSVCAA CTHNCLLFHQ PKQTSPTSFF KFITRQDYLT TLCIPPAFSG  60
IVASMVNKKI NLNDSTGQQW KVKVSEVNGS FVFGEGWSRF SSGHGLKVGY LLVLNYIKDL  120
HFDVKIYDTS ACEKLGLPEK RNQKKRSRGK IGSPVRDGIL VRQELDAPRQ CSKVDLVVPQ  180
KAKESGQHVL ILDHSEEDPC RSKSLEFDQS HEDDGTMKSQ NGDLIVSNVD YESNIVEKDA  240
MICSKDTMFE GVLSTEVALD ISELRIYGRS ASLEADTYTY DKTFNSKIEE NKAILSNREA  300
QECQFSKALG KMKKFPVDMT PNLDSSMDEF HLTGEVSKKL KKELVTLNEM EATGLPKEIN  360
GLLNSDIFNE DNASHFKPTQ LSCVVPHDNV FLVHFTMFFY VCLFILSSLF EHLYLSLLQE  420
LPSCLPLIRK VKVDQQRKML VFLRDPLRRL WPVYYHEKPH LKLLAHGWLN FSRANNIQPK  480
DECIFEAEVD PECKSKRILS VQIVHNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500538.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X2
TrEMBLA0A0S3RFF50.0A0A0S3RFF5_PHAAN; Uncharacterized protein
STRINGGLYMA04G36750.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-12B3 family protein